Posts

Note: This is an update to my previous post: How to Run Snakemake pipeline on HPC. In my previous post, I disucessed some tips on how …

For years I have been sticking with R and RStudio, primarily because RStudio’s useful and user-friendly GUI design (and my own …

I was assisting a bioinformatics workshop for FAANG group at Plant and Animal Genome (PAG) and I ran into an interesting question with …

Why use Snakemake on HPC Snakemake is a handy workflow manager written in Python. It handles workflow based on predefined job …

At the moment of writing this post, I’m sitting on the plane flying to Cornell. There I will learn a beautiful technique called …

Introduction If you have ever written a scientific paper in MS Word (or any other word processing software) then you’re probably …

Table of content Table of content What Are Haplotype and Linkage Disequilibrium (LD) Quantify LD Linkage Disequilibrium Coefficient …

I want to split sequences in a fasta file at Ns. Here is what an example file looks like: >1_name …

Recently Someone asked a question on reddit: Adding a row and a column that are means for a set matrix This is a very simple problem …